Year 1 Publications

24 Mar 2021
Phylogenetic context of Shiga toxin-producing Escherichia coli serotype O26:H11 in England.
Dallman TJ, Greig DR, Gharbia SE, Jenkins C.

17 Mar 2021
Prospective observational study of SARS-CoV-2 infection, transmission and immunity in a cohort of households in Liverpool City Region, UK (COVID-LIV): a study protocol
Setiabudi W, Hungerford D, Subramaniam K on behalf of the COVID-LIV Study Group, et al

15 Mar 2021
Phylogenetic structure of Shiga toxin-producing Escherichia coli O157:H7 from sub-lineage to SNPs.
Dallman TJ, Greig DR, Gharbia SE, Jenkins C.

08 Mar 2021
Analysis of a small outbreak of Shiga toxin-producing Escherichia coli O157:H7 using long-read sequencing
Greig DR, Jenkins C, Gally DL, Gharbia SE, Dallman TJ.

01 Mar 2021
Utility of whole-genome sequencing during an investigation of multiple foodborne outbreaks of Shigella sonnei.
Mikhail AFW, Pereboom M, Utsi L, Hawker J, Lighthill J, Aird H, Swindlehurst M, Greig DR, Jenkins C, Godbole G, Elson R.

01 Feb 2021
Genomic Epidemiology Analysis of Infectious Disease Outbreaks Using TransPhylo
Didelot X, Kendall M, Xu Y, White PJ, McCarthy N.

07 Jan 2021
Shiga toxin-producing Escherichia coli diagnosed by Stx PCR: assessing the public health risk of non-O157 strains.
Carroll KJ, Jenkins C, Harvey-Vince L, Mohan K, Balasegaram S.

02 Jan 2021
An outbreak of human listeriosis associated with frozen sweet corn consumption: Investigations in the UK
Jim McLauchlin, Heather Aird, Corinne Amar, Clare Barker, Timothy Dallman, Sandra Laid, Anais Painset, Caroline Willis

21 Dec 2020
Community transmission of rotavirus infection in a vaccinated population in Blantyre, Malawi: a prospective household cohort study
Aisleen Bennett, Louisa Pollock, Nao rBar-Zeev, Joseph A Lewnard, Khuzwayo C Jere, Benjamin Lopman, Miren Iturriza-Gomara, Virginia E Pitzer, Prof Nigel A Cunliffe

09 Dec 2020
Emergency department syndromic surveillance systems: a systematic review
Helen E. Hughes, Obaghe Edeghere, Sarah J. O’Brien, Roberto Vivancos, Alex J. Elliot

02 Dec 2020
Occurrence of Listeria and Escherichia coli in frozen fruit and vegetables collected from retail and catering premises in England 2018–2019
Caroline Willis, Jim McLauchlin, Heather Aird, Corinne Amar , Clare Barker , Timothy Dallman, Nicola Elviss, Sandra Lai , Lorraine Sadler-Reeves

01 Nov 2020
Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella enterica serovar Typhimurium clone
Tassinari E, Bawn M, Thilliez G, Charity O, Acton L, Kirkwood M, Petrovska L, Dallman T, Burgess CM, Hall N, Duffy G, Kingsley RA.

23 Oct 2020
A Shiga Toxin-Encoding Prophage Recombination Event Confounds the Phylogenetic Relationship Between Two Isolates of Escherichia coli O157:H7 From the Same Patient.
Greig DR, Jenkins C, Dallman TJ

21 Oct 2020
Analysis Shiga Toxin-Encoding Bacteriophage in a Rare Strain of Shiga Toxin-Producing Escherichia coli O157:H7 stx2a/stx2c.
Greig DR, Mikhail AFW, Dallman TJ, Jenkins

09 Oct 2020
Rotavirus Genotypes in Hospitalized Children with Acute Gastroenteritis Before and After Rotavirus Vaccine Introduction in Blantyre, Malawi, 1997 - 2019
Chimwemwe Mhango, Jonathan J Mandolo, End Chinyama, Richard Wachepa, Oscar Kanjerwa , Chikondi Malamba-Banda, Prisca B Matambo, Kayla G Barnes, Chrispin Chaguza, Isaac T Shawa , Martin M Nyaga , Daniel Hungerford, Umesh D Parashar , Virginia E Pitzer, Arox W Kamng'ona, Miren Iturriza-Gomara, Nigel A Cunliffe, Khuzwayo C Jere

08 Oct 2020
Using emergency department syndromic surveillance to investigate the impact of a national vaccination program: A retrospective observational study
Helen E Hughes, Alex J Elliot, Thomas C Hughes, Daniel Hungerford, Roger A Morbey, Gillian E Smith , Roberto Vivancos, Sarah J O'Brien

07 Oct 2020
Adapting Syndromic Surveillance Baselines After Public Health Interventions
Roger Antony Morbey, Alex James Elliot, Gillian Elizabeth Smith, Andre Charlett

18 Sep 2020
Emergency department use during COVID-19 as described by syndromic surveillance
Helen E Hughes, Thomas C Hughes, Roger Morbey, Kirsty Challen, Isabel Oliver, Gillian E Smith, Alex J Elliot

01 Sep 2020
Neighbourhood unemployment and other socio-demographic predictors of emergency hospitalisation for infectious intestinal disease in England: A longitudinal ecological study
Tanith C. Rose, Natalie L. Adams, Margaret Whitehead, Sophie Wickham, .Sarah J. O'Brien, Jeremy Hawker, David C. Taylor-Robinson, Mara Violato, Benjamin Barr

14 Jul 2020
Listeria monocytogenes in Cooked Chicken: Detection of an Outbreak in the United Kingdom (2016 to 2017) and Analysis of L. monocytogenes from Unrelated Monitoring of Foods (2013 to 2017)
J McLauchlin , H Aird, C Amar, C Barker, T Dallman, N Elviss , F JØrgensen , C Willis

22 Jun 2020
Microevolution of Campylobacter jejuni during long-term infection in an immunocompromised host.
Barker CR, Painset A, Swift C, Jenkins C, Godbole G, Maiden MCJ, Dallman TJ

18 Jun 2020
The COVID-19 pandemic: a new challenge for syndromic surveillance
Alex J. Elliot, Sally E. Harcourt, Helen E. Hughes, Paul Loveridge, Roger A. Morbey, Sue Smith, Ana Soriano, Amardeep Bains, Gillian E. Smith, Obaghe Edeghere, Isabel Oliver

18 Jun 2020
Shiga toxin-producing Escherichia coli haemolytic uraemic syndrome (STEC-HUS): diagnosis, surveillance and public-health management in England
Jenkins C, Byrne L, Vishram B, Sawyer C, Balasegaram S, Ahyow L, Johnson S

12 Jun 2020
Antimicrobial resistance profiles of diarrhoeagenic Escherichia coli isolated from travellers returning to the UK, 2015-2017.
Boxall MD, Day MR, Greig DR, Jenkins C

20 May 2020
Incidence, risk factors, and health service burden of sequelae of campylobacter and non-typhoidal salmonella infections in England, 2000–2015: A retrospective cohort study using linked electronic health records
Oluwaseun B. Esana, Rafael Pereraa, Noel McCarthy, Mara Violato, Thomas R. Fanshawe

02 Apr 2020
Evidence for re-infection and persistent carriage of Shigella species in adult males reporting domestically acquired infection in England.
Allen H, Mitchell HD, Simms I, Baker KS, Foster K, Hughes G, Dallman TJ, Jenkins C.

25 Mar 2020
Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei.
Bardsley M, Jenkins C, Mitchell HD, Mikhail AFW, Baker KS, Foster K, Hughes G, Dallman TJ

25 Feb 2020
Comparison of Shiga toxin-encoding bacteriophages in highly pathogenic strains of Shiga toxin-producing Escherichia coli O157:H7 in the UK.
Yara DA, Greig DR, Gally DL, Dallman TJ, Jenkins C

16 Jan 2020
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Campylobacter jejuni and Campylobacter coli isolated from cases of diarrhoeal disease in England and Wales, 2015-16.
Painset A, Day M, Doumith M, Rigby J, Jenkins C, Grant K, Dallman TJ, Godbole G, Swift C

14 Jan 2020
Evaluation of chromogenic selective agar (CHROMagar STEC) for the direct detection of Shiga toxin-producing Escherichia coli from faecal specimens
Jenkins C, Perry NT, Godbole G, Gharbia S.