2021-22 Publications

05 Nov 2021
Describing the indirect impact of COVID-19 on healthcare utilisation using syndromic surveillance systems.
Ferraro CF, Findlater L, Morbey R, Hughes HE, Harcourt S, Hughes TC, Elliot AJ, Oliver I, Smith GE.

14 Oct 2021
Characterization of a pESI-like plasmid and analysis of multidrug-resistant Salmonella enterica Infantis isolates in England and Wales.
Lee WWY, Mattock J, Greig DR, Langridge GC, Baker D, Bloomfield S, Mather AE, Wain JR, Edwards AM, Hartman H, Dallman TJ, Chattaway MA, Nair S.

25 Aug 2021
Differential impact of the COVID-19 pandemic on laboratory reporting of norovirus and Campylobacter in England: A modelling approach.
Ondrikova N, Clough HE, Douglas A, Iturriza-Gomara M, Larkin L, Vivancos R, Harris JP, Cunliffe NA.

24 Aug 2021
Acquisition and loss of CTX-M plasmids in Shigella species associated with MSM transmission in the UK.
Locke RK, Greig DR, Jenkins C, Dallman TJ, Cowley LA.

10 Aug 2021
Epidemiological investigations identified an outbreak of Shiga toxin-producing Escherichia coli serotype O26:H11 associated with pre-packed sandwiches.
Butt S, Allison L, Vishram B, Greig DR, Aird H, McDonald E, Drennan G, Jenkins C, Byrne L, Licence K, Smith-Palmer A; Incident Management Team

09 Aug 2021
Investigation of SARS-CoV-2 faecal shedding in the community: a prospective household cohort study (COVID-LIV) in the UK
Vaselli NM, Setiabudi W, Subramaniam K, Adams ER, Turtle L, Iturriza-Gómara M, et al.

03 Aug 2021
School-based surveillance of acute infectious disease in children: a systematic review.
Donaldson, A.L., Hardstaff, J.L., Harris, J.P. et al.

29 Jun 2021
Paediatric rotavirus vaccination, coeliac disease and type 1 diabetes in children: a population-based cohort study
Inns T, Fleming K, Iturriza-Gómara M, Hungerford D.

28 Jun 2021
Understanding norovirus reporting patterns in England: a mixed model approach.
Ondrikova N, Clough HE, Cunliffe NA, Iturriza-Gomara M, Vivancos R, Harris JP

22 Jun 2021
Interpreting a lateral flow SARS-CoV-2 antigen test
Mytton OT, McCarthy N, Watson J, Whiting P.

07 Jun 2021
Outbreak Control Team. Evidence of on-going transmission of Shiga toxin-producing Escherichia coli O157:H7 following a foodborne outbreak.
Butt S, Smith-Palmer A, Shand A, McDonald E, Allison L, Maund J, Fernandes A, Vishram B, Greig DR, Jenkins C, Elson R;

01 Jun 2021
How are inequalities generated in the management and consequences of gastrointestinal infections in the UK? An ethnographic study
Suzie Rotheram, Jessie Cooper, Ben Barr, Margaret Whitehead

12 May 2021
ESBL-producing strains isolated from imported cases of enteric fever in England and Wales reveal multiple chromosomal integrations of blaCTX-M-15 in XDR Salmonella Typhi
Nair S, Chattaway M, Langridge GC, Gentle A, Day M, Ainsworth EV, Mohamed I, Smith R, Jenkins C, Dallman TJ, Godbole G.

11 May 2021
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
Hawkey, J., Paranagama, K., Baker, K.S. et al.

04 May 2021
Whole genome sequence analysis of Shigella from Malawi identifies fluoroquinolone resistance.
George E. Stenhouse, Khuzwayo C. Jere, Chikondi Peno, Rebecca J. Bengtsson, End Chinyama, Jonathan Mandolo, Amy K. Cain, Miren Iturriza-Gómara, Naor Bar-Zeev, Nigel A. Cunliffe, Jennifer Cornick, Kate S. Baker.

01 May 2021
Community transmission of rotavirus infection in a vaccinated population in Blantyre, Malawi: a prospective household cohort study
Bennett A, Pollock L, Bar-Zeev N, Lewnard JA, Jere KC, Lopman B, Iturriza-Gomara M, Pitzer VE, Cunliffe NA.

27 Apr 2021
Accessory genome dynamics and structural variation of Shigella from persistent infections
Rebecca J. Bengtsson, Timothy J. Dallman, Claire Jenkins, Hester Allen, P. Malaka De Silva, George Stenhouse, Caisey V. Pulford, Rebecca J. Bennett, Kate S. Baker

22 Apr 2021
Outbreak of Shiga toxin-producing Escherichia coli O157 linked with consumption of a fast-food product containing imported cucumbers, United Kingdom, August 2020.
Mulchandani R, Brehmer C, Butt S, Vishram B, Harrison M, Marchant E, Ferris S, Jorgensen F, Smith R, Godbole G, Jenkins C, Dallman TJ, Verlander NQ, Phin N, Todkill D, Gharbia S, Hawker J

19 Apr 2021
Epidemiological investigation of recurrent outbreaks of haemolytic uraemic syndrome caused by Shiga toxin-producing Escherichia coli serotype O55:H7 in England, 2014-2018. Epidemiol Infect.
Sawyer C, Vishram B, Jenkins C, Jorgensen F, Byrne L, Mikhail AFW, Dallman TJ, Carroll K, Ahyow L, Vahora Q, Godbole G, Balasegaram S.

01 Apr 2021
Phylogenetic structure of Shiga toxin-producing Escherichia coli O157:H7 from sub-lineage to SNPs.
Dallman TJ, Greig DR, Gharbia SE, Jenkins C.